PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 1122aa    MW: 125912 Da    PI: 9.4827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-104479340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE e+++da +++G++ Wk++a+ +  +R+ +++
   XP_010551056.1 44 QWSKEELERFYDAYRKFGKE-WKKVAAFVR-TRSIEMV 79
                     6*******************.*********.**98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-103990IPR009057Homeodomain-like
SMARTSM007173.2E-44189IPR001005SANT/Myb domain
PfamPF002493.0E-84479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-44477IPR009057Homeodomain-like
CDDcd001671.82E-54587No hitNo description
SMARTSM011351.9E-56630731IPR033471DIRP domain
PfamPF065849.4E-31630730IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MAPSKKSKYK KASRVNVVSP NKDEENKSKT RQRKRKLSDM LGPQWSKEEL ERFYDAYRKF  60
GKEWKKVAAF VRTRSIEMVE ALYTMNKAYL SLPEGTASVV GLIAMMTDHY TVLHGGSDSE  120
QESNEGTNTP RKGQKLARVK SSDHLSKGLE GLSDRLQFRS SSGSLSLLKR RRTETVPRAV  180
GKRTPRIPVS FSREKDKRER YLSPVKRGLK LKGDAIDDDM EHEIALALAE ALQRGGSPQV  240
SRTPNRKEKM YSPYKKDEKM RAEIDMAIAK LHSSDMDEGG CELSLGSTEA DNGDFAGPRN  300
YLMHGEGSSA VEMLQKGKRY YMQKLDVDES PNNRTDDVKE ACSGTEEGQH LGPCKDKFEP  360
EGVVENSSKP TYKSSRRKSK KVLFTADEGA ACDALQTLAD LSLMMPDTAT DTESSIQVKE  420
ERAAKADESD LKGSGPAPRS KMGSLKFSKQ RKSTTDVLSN TEAERKSPSS IVMRKRRQKS  480
SPVKVPKDEA PSSSQFAESP NRKGIDEGKR PVGRGKRSTN IPNSHGKKSV KHHDHTSSSN  540
GIVEGNGTAL STAQTYKKQV NLPTKGRRRR KTPAEKLLTD EDGKSSEILV NGFSNTQIQS  600
LNDKSLNLKE KLSHYLSSYR SRRWCVFEWF YSAIDYPWFS RQEFVEYLDH VGLGHVPRFT  660
RVEWGVIRSS LGKPRRFSEQ FLKEEKEKLY LYRDSVRKYY VKLNAGVREG LPTDLARPLN  720
VGQRVIALHP RTREIHDGSV LTFDHSKYRV QFDHSDLGVE FVKDTECMPL NPLQNIPASL  780
AQQYVSLNHH IQNHSMLKMH EQEIENMPEG YLKLSCETLE NSRGPHLSPS NYNISNSLKQ  840
QKGQAKEADA QALSELTRAL DKKELVLSAL KCMNSEIEES QKDGNKALKD SEPFKKQYAA  900
VLFQLSEINE QVSSALLRLR QRNTYQASSS YMPFRCMNTS GDPDGHLTCL DNSVSESHDH  960
GPHVSEIVES SRTKARSMVN RAMEAMTSLK TEKNNVVNIE EAIDFVNDNL SVDCAEAPVQ  1020
RPQVAHDQLL ASGPNPAIDS RSNPLGRNDP QIPSELVSRC VATLLMIQKC TERQFPPSEV  1080
AEVLDSAVAS LQPSCSQNFP IYAEIQKCMG IIRNQILALV PT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472477MRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551056.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X2
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLD7L0S70.0D7L0S7_ARALL; Always early protein 3
STRINGfgenesh2_kg.3__2365__AT3G21430.20.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding